Ye lab has developed a variety of software tools to decipher the data for glycoproteomics analysis and ligand target protein identification. They could be downloaded from https://github.com/DICP-1809

Publications related to software tools:

Glyco-Decipher enables glycan databaseindependent peptide matching and in-depth characterization of site-specific N-glycosylation

Zheng Fang, Hongqiang Qin, Jiawei Mao, Zhongyu Wang, Na Zhang, Yan Wang, Luyao Liu,Yongzhan Nie, Mingming Dong, Mingliang Ye

Nature Communications, 2022, 13:1900, 1-15

GP‑Marker facilitates the analysis of intact glycopeptide quantitative data at diferent levels

Qi Liu, He Zhu, Zheng Fang, Mingming Dong, Hongqiang Qin, Mingliang Ye

Analytical and Bioanalytical Chemistry, 2024, 1-11

O‑Search-Pattern: A Searching Tool Utilizing the Y‑Ion Pattern to Enhance O‑Glycopeptide Identification for the Analysis of O‑GalNAc Glycoproteome

He Zhu, Luyao Liu, Zheng Fang, Hongqiang Qin, Mingming Dong, and Mingliang Ye

Analytical Chemistry, 2023, 95, 9761−9768

MS-Decipher: a user-friendly proteome database search software with an emphasis on deciphering the spectra of O-linked glycopeptides

Jiawei Mao, He Zhu, Luyao Liu, Zheng Fang, Mingming Dong, Hongqiang Qin, Mingliang Ye

Bioinformatics, 2022, 38, 7, 1911-1919

A New Searching Strategy for the Identification of O‑Linked Glycopeptides

Jiawei Mao, Xin You, Hongqiang Qin, Chengye Wang, Liming Wang, Mingliang Ye

Analytical Chemistry, 2019, 91, 3852−3859